Compound Info
NAs Base Info
ID Cluster Name Target MolWt
Compound Structure
NAs.000278 2
Target name Tax id
Protein-arginine N-methyltransferase 1 9606.0
Histone-lysine N-methyltransferase SUV39H1 9606.0
DNA (cytosine-5)-methyltransferase 1 9606.0
Histone-lysine N-methyltransferase 9606.0
H3 lysine-79 specific 9606.0
Histone-arginine methyltransferase CARM1 9606.0
540.669
Chemical Representations
InChI InChI=1S/C27H40N8O4/c1-16(2)34(12-6-11-29-26(38)33-18-9-7-17(8-10-18)27(3,4)5)13-19-21(36)22(37)25(39-19)35-15-32-20-23(28)30-14-31-24(20)35/h7-10,14-16,19,21-22,25,36-37H,6,11-13H2,1-5H3,(H2,28,30,31)(H2,29,33,38)/t19-,21-,22-,25-/m1/s1
InChI Key MTLMDZJUGDUTCP-PTGPVQHPSA-N
SMILES CC(C)N(CCCNC(=O)Nc1ccc(C(C)(C)C)cc1)C[C@H]1O[C@@H](n2cnc3c(N)ncnc32)[C@H](O)[C@@H]1O
Molecular Formula C27H40N8O4
Functional Fragments
Base Ribose Phosphate
Base Structure
Match
No Image Available
Match
Calculated Properties
logP 2.247 Computed by RDKit
Heavy Atom Count 39 Computed by RDKit
Ring Count 4 Computed by RDKit
Hydrogen Bond Acceptor Count 10 Computed by RDKit
Hydrogen Bond Donor Count 5 Computed by RDKit
Rotatable Bond Count 9 Computed by RDKit
Topological Polar Surface Area 163.680 Computed by RDKit
Activity Data
Target Activity type Relation Value Unit Assay Source
MV4-11 GI Cytotoxicity against human MV4-11 cells harboring MLL-AF4 oncogene assessed as growth inhibition at 1 to 30 uM by XTT assay CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 66.0 nM Binding affinity at human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 550.0 nM Competitive inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay in presence of 20 uM of SAH CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 240.0 nM Competitive inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay in presence of 10 uM of SAH CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 200.0 nM Competitive inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay in presence of 5 uM of SAH CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 130.0 nM Competitive inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay in presence of 2.5 uM of SAH CHEMBL2169812
Unchecked Ratio Ki > 4500.0 Selectivity ratio of Ki for SUV39H1 to Ki for human recombinant DOT1L catalytic domain amino acid (1 to 472) CHEMBL2169812
Unchecked Ratio Ki > 4500.0 Selectivity ratio of Ki for CARM1 to Ki for human recombinant DOT1L catalytic domain amino acid (1 to 472) CHEMBL2169812
Unchecked Ratio Ki > 4500.0 Selectivity ratio of Ki for PRMT1 to Ki for human recombinant DOT1L catalytic domain amino acid (1 to 472) CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 73.0 nM Competitive inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472)-nucleosome complex by isothermal titration calorimetric assay in presence of 1 uM of SAH CHEMBL2169812
NB-4 EC50 = 101000.0 nM Cytotoxicity against human NB4 cells harboring wild type MLL oncogene after 20 days by XTT assay CHEMBL2169812
THP-1 EC50 = 8100.0 nM Cytotoxicity against human THP1 cells harboring MLL-AF9 oncogene after 20 days by XTT assay CHEMBL2169812
MV4-11 EC50 = 4400.0 nM Cytotoxicity against human MV4-11 cells harboring MLL-AF4 oncogene after 20 days by XTT assay CHEMBL2169812
MV4-11 GI = 91.7 % Cytotoxicity against human MV4-11 cells harboring MLL-AF4 oncogene assessed as growth inhibition at 10 uM measured on day 20 by XTT assay CHEMBL2169812
MV4-11 GI = 61.7 % Cytotoxicity against human MV4-11 cells harboring MLL-AF4 oncogene assessed as growth inhibition at 10 uM measured on day 15 by XTT assay CHEMBL2169812
Histone-lysine N-methyltransferase SUV39H1 Ki > 100000.0 nM Inhibition of SUV39H1 CHEMBL2169812
Histone-arginine methyltransferase CARM1 Ki > 100000.0 nM Inhibition of CARM1 CHEMBL2169812
Protein-arginine N-methyltransferase 1 Ki > 100000.0 nM Inhibition of PRMT1 CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Ki = 0.46 nM Inhibition of human recombinant DOT1L catalytic domain amino acid (1 to 472) using [3H]-SAM after 30 mins by scintillation counter CHEMBL2169812
Histone-lysine N-methyltransferase, H3 lysine-79 specific Kd = 170.0 nM Binding affinity at human recombinant DOT1L catalytic domain amino acid (1 to 472) by isothermal titration calorimetric assay CHEMBL2169812
MV4-11 GI Cytotoxicity against human MV4-11 cells harboring MLL-AF4 oncogenes assessed as growth inhibition at 10 uM measured on day 10 CHEMBL2169812
THP-1 EC50 = 4.0 nM Antiproliferative activity against human THP1 cells containing MLL-AF9 CHEMBL3085656
MV4-11 EC50 = 4.0 nM Antiproliferative activity against human MV4-11 cells containing MLL-AF4 CHEMBL3085656
MOLM-13 EC50 = 4.0 nM Antiproliferative activity against human MOLM13 cells containing MLL-AF9 CHEMBL3085656
Histone-lysine N-methyltransferase, H3 lysine-79 specific Ki = 0.5 nM Competitive inhibition of recombinant human DOT1L using adenosine/deazaadenosine as substrate and SAM cofactor CHEMBL3085656
Liver microsome CLH = 24.0 uL/min Intrinsic clearance in human liver microsomes assessed per mg of protein CHEMBL3085656
Histone-lysine N-methyltransferase, H3 lysine-79 specific EC50 = 9.0 nM Inhibition of DOT1L (unknown origin)-mediated H3K79 methylation by cell based assay CHEMBL3085656
Liver microsome CLH = 24.0 uL/min Intrinsic clearance in human liver microsomes measured per gram of protein at 200 uM measured after 1 by LC/MS/MS method CHEMBL3132754
Liver microsome Stability = 50.0 % Metabolic stability in human liver microsomes assessed as compound remaining at 200 uM measured after 1 hr by LC/MS/MS method CHEMBL3132754
Plasma Stability = 90.0 % Stability in human plasma assessed as compound remaining at 5 uM after 1 hr by LC/MS/MS method CHEMBL3132754
Histone-lysine N-methyltransferase SUV39H1 Ki > 50000.0 nM Inhibition of SUV39H1 (unknown origin) CHEMBL3132754
Histone-lysine N-methyltransferase, H3 lysine-79 specific Ki = 0.72 nM Inhibition of human recombinant DOT1L (catalytic domain 1 to 472) using [3H]-SAM by scintillation containing CHEMBL3132754
Histone-arginine methyltransferase CARM1 Ki > 50000.0 nM Inhibition of CARM1 (unknown origin) CHEMBL3132754
MV4-11 IC50 = 200.0 nM Induction of histone methylation in human MV4-11 cells assessed as H3K79 methylation after 4 days by Western blot analysis CHEMBL3132754
Protein-arginine N-methyltransferase 1 Ki > 50000.0 nM Inhibition of PRMT1 (unknown origin) CHEMBL3132754
No relevant target LogD7.4 2.2 ASTRAZENECA: Octan-1-ol/water (pH7.4) distribution coefficent measured by a shake flask method described in J. Biomol. Screen. 2011, 16, 348-355. Experimental range -1.5 to 4.5 CHEMBL3301361
ADMET PPB 71.53 % ASTRAZENECA: % bound to plasma by equilibrium dialysis. Compound is incubated with whole human plasma at 37C for >5hrs. Method described in B. Testa et al (Eds.), Pharmacokinetic Profiling in Drug Research: Biological, Physicochemical, and Computational Strategies, Wiley-VCH, Weinheim, 2006, pp.119-141. Experimental range 10% to 99.95% bound. CHEMBL3301361
ADMET CL 26.92 uL.min-1.(10^6cells)-1 ASTRAZENECA: Intrinsic clearance measured in rat hepatocytes following incubation at 37C. Experimental range <3 to >150 microL/min/1E6 cells. Rapid Commun. Mass Spectrom. 2010, 24, 1730-1736 CHEMBL3301361
ADMET CL 112.2 mL.min-1.g-1 ASTRAZENECA: Intrinsic clearance measured in human liver microsomes following incubation at 37C. Experimental range <3 to >150 microL/min/mg. Rapid Commun. Mass Spectrom. 2010, 24, 1730-1736. CHEMBL3301361
Histone-lysine N-methyltransferase, H3 lysine-79 specific IC50 = 100.0 nM Inhibition of recombinant human N-terminal GST-tagged DOT1L (2 to 416 residues) expressed in Escherichia coli assessed as reduction in histone H3 lysine-N-methyltransferase activity using nucleosomes after 3 hrs in presence of SAM by AlphLisa assay CHEMBL4043280
Histone-lysine N-methyltransferase, H3 lysine-79 specific IC50 = 14.0 nM Inhibition of recombinant human His6-SUMO tagged DOT1L (1 to 416 residues) expressed in Escherichia coli BL21(DE3) using oligonucleosome as substrate measured after 30 mins in presence of SAM by AlphaLISA assay CHEMBL4219142
Plasmodium falciparum Inhibition = 9.7 % Antiplasmodial activity against asynchronous form of Plasmodium falciparum 3D7 infected in human erythrocytes assessed as parasite growth inhibition at 10 uM after 48 hrs by SYBR green1 staining based flow cytometry relative to control CHEMBL4325862
Plasmodium falciparum IC50 Antiplasmodial activity against asynchronous form of Plasmodium falciparum 3D7 infected in human erythrocytes assessed as parasite growth inhibition after 48 hrs by SYBR green1 staining based flow cytometry CHEMBL4325862
DNA (cytosine-5)-methyltransferase 1 IC50 = 2.9 nM Inhibition of DNMT1 (unknown origin) CHEMBL4477246