Compound Info
NAs Base Info
ID Cluster Name Target MolWt
Compound Structure
NAs.000518 2
Target name Tax id
DNA (cytosine-5)-methyltransferase 3B 9606.0
DNA (cytosine-5)-methyltransferase 1 9606.0
475.531
Chemical Representations
InChI InChI=1S/C20H25N7O5S/c21-12(20(30)31)3-6-33-8-13-15(28)16(29)19(32-13)27-10-26-14-17(24-9-25-18(14)27)23-7-11-1-4-22-5-2-11/h1-2,4-5,9-10,12-13,15-16,19,28-29H,3,6-8,21H2,(H,30,31)(H,23,24,25)/t12?,13-,15-,16-,19-/m1/s1
InChI Key VQOWPWAOTNFGDX-XTMLTMLVSA-N
SMILES NC(CCSC[C@H]1O[C@@H](n2cnc3c(NCc4ccncc4)ncnc32)[C@H](O)[C@@H]1O)C(=O)O
Molecular Formula C20H25N7O5S
Functional Fragments
Base Ribose Phosphate
Base Structure
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Calculated Properties
logP -0.012 Computed by RDKit
Heavy Atom Count 33 Computed by RDKit
Ring Count 4 Computed by RDKit
Hydrogen Bond Acceptor Count 12 Computed by RDKit
Hydrogen Bond Donor Count 5 Computed by RDKit
Rotatable Bond Count 10 Computed by RDKit
Topological Polar Surface Area 181.530 Computed by RDKit
Activity Data
Target Activity type Relation Value Unit Assay Source
DNA (cytosine-5)-methyltransferase 1 IC50 = 22000.0 nM Inhibition of human recombinant DNMT1 expressed in baculovirus infected high five insect cells CHEMBL1151871
DNA (cytosine-5)-methyltransferase 3B IC50 = 3600.0 nM Inhibition of human recombinant DNMT3b2 expressed in baculovirus infected high five insect cells CHEMBL1151871