Compound Info
NAs Base Info
ID Cluster Name Target MolWt
Compound Structure
NAs.004225 7
Target name Tax id
DNA (cytosine-5)-methyltransferase 1 9606.0
DNA (cytosine-5)-methyltransferase 3A 9606.0
517.634
Chemical Representations
InChI InChI=1S/C28H35N7O3/c1-37-21-35-17-12-26(34-28(35)36)30-16-15-29-13-6-18-38-23-10-11-24-25(19-23)32-20-33-27(24)31-14-5-9-22-7-3-2-4-8-22/h2-4,7-8,10-12,17,19-20,29H,5-6,9,13-16,18,21H2,1H3,(H,30,34,36)(H,31,32,33)
InChI Key YCAUOINWAVXVHZ-UHFFFAOYSA-N
SMILES COCn1ccc(NCCNCCCOc2ccc3c(NCCCc4ccccc4)ncnc3c2)nc1=O
Molecular Formula C28H35N7O3
Functional Fragments
Base Ribose Phosphate
Base Structure
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Calculated Properties
logP 3.306 Computed by RDKit
Heavy Atom Count 38 Computed by RDKit
Ring Count 4 Computed by RDKit
Hydrogen Bond Acceptor Count 10 Computed by RDKit
Hydrogen Bond Donor Count 3 Computed by RDKit
Rotatable Bond Count 16 Computed by RDKit
Topological Polar Surface Area 115.220 Computed by RDKit
Activity Data
Target Activity type Relation Value Unit Assay Source
DNA (cytosine-5)-methyltransferase 3A Inhibition = 0.0 % Inhibition of human DNMT3A catalytic domain using AdoMet assessed as reduction of methylation in 5'-biotin/3' 6-carboxyfluorescein labeled DNA duplex at CpG site at 32 uM after 1 hr by fluorescence assay relative to control CHEMBL4014314
DNA (cytosine-5)-methyltransferase 3A Inhibition = 0.0 % Inhibition of human DNMT3A catalytic domain using AdoMet assessed as reduction of methylation in 5'-biotin/3' 6-carboxyfluorescein labeled DNA duplex at CpG site at 10 uM after 1 hr by fluorescence assay relative to control CHEMBL4014314
DNA (cytosine-5)-methyltransferase 1 Inhibition = 0.0 % Inhibition of full length His-tagged human DNMT1 using SAM/[methyl-3H]SAM assessed as reduction of methylation in biotinylated hemimethylated DNA duplex at 32 uM after 1 hr by scintillation counting method relative to control CHEMBL4014314
DNA (cytosine-5)-methyltransferase 1 Inhibition = 0.0 % Inhibition of full length His-tagged human DNMT1 using SAM/[methyl-3H]SAM assessed as reduction of methylation in biotinylated hemimethylated DNA duplex at 100 uM after 1 hr by scintillation counting method relative to control CHEMBL4014314