Compound Info
NAs Base Info
ID Cluster Name Target MolWt
Compound Structure
NAs.008946 2
Target name Tax id
DNA (cytosine-5)-methyltransferase 3A 9606.0
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 9606.0
tRNA (cytosine(38)-C(5))-methyltransferase 9606.0
RNA cytosine C(5)-methyltransferase NSUN2 9606.0
Histone-lysine N-methyltransferase 9606.0
H3 lysine-9 specific 3 9606.0
433.469
Chemical Representations
InChI InChI=1S/C19H27N7O5/c1-2-3-4-6-25(7-5-11(20)19(29)30)8-12-14(27)15(28)18(31-12)26-10-24-13-16(21)22-9-23-17(13)26/h9-12,14-15,18,27-28H,2,5-8,20H2,1H3,(H,29,30)(H2,21,22,23)/t11-,12+,14+,15+,18+/m0/s1
InChI Key ACRZBOXAKRENTK-URQYDQELSA-N
SMILES CCC#CCN(CC[C@H](N)C(=O)O)C[C@H]1O[C@@H](n2cnc3c(N)ncnc32)[C@H](O)[C@@H]1O
Molecular Formula C19H27N7O5
Functional Fragments
Base Ribose Phosphate
Base Structure
Match
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Match
Calculated Properties
logP -1.455 Computed by RDKit
Heavy Atom Count 31 Computed by RDKit
Ring Count 3 Computed by RDKit
Hydrogen Bond Acceptor Count 11 Computed by RDKit
Hydrogen Bond Donor Count 5 Computed by RDKit
Rotatable Bond Count 8 Computed by RDKit
Topological Polar Surface Area 185.870 Computed by RDKit
Activity Data
Target Activity type Relation Value Unit Assay Source
tRNA (cytosine(38)-C(5))-methyltransferase Activity Binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM incubated for 5 mins by microscale thermophoresis assay CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase Inhibition = 62.8 % Inhibition of full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM using tRNA asp as substrate and SAM as co-substrate incubated for 5 mins by tritium incorporation assay relative to control CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase Kd = 10500.0 nM Binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS assessed as dissociation constant at 100 uM by isothermal titration calorimetry assay CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase IC50 = 32200.0 nM Inhibition of full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS by isothermal titration calorimetry assay CHEMBL5131574
Unchecked Selectivity ratio = 3.0 Selectivity ratio of Kd for binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS assessed as dissociation constant to IC50 for inhibition of full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase deltaG = -28.4 kJ/mol Binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS assessed as gibbs free energy change at 100 uM by isothermal titration calorimetry assay CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase deltaH = -27.0 kJ/mol Binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS assessed as change in enthalpy change at 100 uM by isothermal titration calorimetry assay CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase -TdeltaS = -1.4 kJ/mol Binding affinity to full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS assessed as change in entropy at 100 uM by isothermal titration calorimetry assay CHEMBL5131574
DNA (cytosine-5)-methyltransferase 3A Inhibition = 95.3 % Inhibition of recombinant human DNMT3A-3L expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM using Poly(dI-dC)-Poly(dI-dC) as substrate measured at 150 mins by liquid scintillation counting analysis CHEMBL5131574
RNA cytosine C(5)-methyltransferase NSUN2 Inhibition % Inhibition of full length recombinant human NSUN2 expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM measured at 20 mins by liquid scintillation counting analysis CHEMBL5131574
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 Inhibition = 22.7 % Inhibition of full length human NSUN6 expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM measured at 20 mins by liquid scintillation counting analysis CHEMBL5131574
Histone-lysine N-methyltransferase, H3 lysine-9 specific 3 Inhibition = 32.0 % Inhibition of recombinant human EHMT2 G9a expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM using histone H3 as substrate measured at 120 mins by liquid scintillation counting analysis CHEMBL5131574
tRNA (cytosine(38)-C(5))-methyltransferase Inhibition = 62.8 % Inhibition of full length human N-terminal his6-tagged DNMT2 expressed in Escherichia coli Rosetta2(DE3)pLysS at 100 uM by liquid scintillation counting analysis CHEMBL5131574